U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106608019 GEN1 Holliday junction 5' flap endonuclease [ Salmo salar (Atlantic salmon) ]

Gene ID: 106608019, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LOC106608019
Gene description
GEN1 Holliday junction 5' flap endonuclease
See related
Ensembl:ENSSSAG00000012916
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
gen1
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: ssa06
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (69914783..69921643)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (67293581..67300508, complement)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:dkey-126g1.9 Neighboring gene cytochrome P450 2K6 Neighboring gene Structural maintenance of chromosomes protein 6-like Neighboring gene uncharacterized LOC106608017 Neighboring gene mesogenin 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-flap endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
flap endonuclease GEN homolog 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    69914783..69921643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014205650.2 → XP_014061125.1  flap endonuclease GEN homolog 1

    UniProtKB/TrEMBL
    A0A1S3S9W9
    Related
    ENSSSAP00000022274.2, ENSSSAT00000026263.2
    Conserved Domains (2) summary
    cl14812
    Location:1 → 198
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
    cl22433
    Location:200 → 341
    H3TH_StructSpec-5'-nucleases; H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.