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LOC106606241 rogdi atypical leucine zipper [ Salmo salar (Atlantic salmon) ]

Gene ID: 106606241, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106606241
Gene description
rogdi atypical leucine zipper
See related
Ensembl:ENSSSAG00000082876
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
rogdi
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Genomic context

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See LOC106606241 in Genome Data Viewer
Location:
chromosome: ssa06
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (4241087..4262244)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (1616514..1630001)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene periplakin Neighboring gene putative oxidoreductase GLYR1 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small integral membrane protein 22-like Neighboring gene conserved oligomeric Golgi complex subunit 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of RAVE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein rogdi homolog
Names
rogdi homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    4241087..4262244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045719581.1 → XP_045575537.1  protein rogdi homolog

    UniProtKB/TrEMBL
    A0A1S3S130
    Related
    ENSSSAP00000161321.1, ENSSSAT00000231268.1
    Conserved Domains (1) summary
    pfam10259
    Location:28 → 286
    Rogdi_lz; Rogdi leucine zipper containing protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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