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LOC106585690 vacuolar protein sorting-associated protein 13A [ Salmo salar (Atlantic salmon) ]

Gene ID: 106585690, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106585690
Gene description
vacuolar protein sorting-associated protein 13A
See related
Ensembl:ENSSSAG00000069212
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
vps13a
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Genomic context

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Location:
chromosome: ssa24
Exon count:
70
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa24 NC_059465.1 (29556247..29622597)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa24 NC_027323.1 (30870282..30935135)

Chromosome ssa24 - NC_059465.1Genomic Context describing neighboring genes Neighboring gene forkhead box protein B2 Neighboring gene C2 calcium-dependent domain-containing protein 4C Neighboring gene guanine nucleotide-binding protein subunit alpha-14-like Neighboring gene guanine nucleotide-binding protein G(q) subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Micallef G, et al. Mar Biotechnol (NY), 2012 Oct. PMID 22527268

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13A
Names
vacuolar protein sorting 13 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059465.1 Reference Ssal_v3.1

    Range
    29556247..29622597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014172179.2 → XP_014027654.1  vacuolar protein sorting-associated protein 13A isoform X1

    UniProtKB/TrEMBL
    A0A1S3NLA0, A0A1S3PJV1
    Related
    ENSSSAP00000086972.2, ENSSSAT00000120867.2
    Conserved Domains (7) summary
    COG5043
    Location:4 → 2139
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2260 → 2532
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3026 → 3105
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2846 → 3023
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:574 → 797
    VPS13_mid_rpt; Repeating coiled region of VPS13

  2. XM_014172180.2 → XP_014027655.1  vacuolar protein sorting-associated protein 13A isoform X2

    UniProtKB/TrEMBL
    A0A1S3NLS9, A0A1S3PJ28
    Related
    ENSSSAP00000087246.2, ENSSSAT00000121155.2
    Conserved Domains (7) summary
    COG5043
    Location:4 → 2139
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2260 → 2506
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3000 → 3079
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2820 → 2997
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:574 → 797
    VPS13_mid_rpt; Repeating coiled region of VPS13
Nucleotide Protein
Heading Accession and Version

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