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ddx3xa DEAD-box helicase 3 X-linked a [ Salmo salar (Atlantic salmon) ]

Gene ID: 106581947, updated on 13-Mar-2024

Summary

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Gene symbol
ddx3xa
Gene description
DEAD-box helicase 3 X-linked a
See related
Ensembl:ENSSSAG00000078626
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
ddx3x
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa21
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (22791685..22816082, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (22685345..22711195, complement)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene peripheral plasma membrane protein CASK Neighboring gene G protein-coupled receptor 34b Neighboring gene uncharacterized LOC123729556 Neighboring gene probable ubiquitin carboxyl-terminal hydrolase FAF-X Neighboring gene ribosomal protein L8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD-box helicase 3 X-linked a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    22791685..22816082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014164506.2 → XP_014019981.1  DEAD-box helicase 3 X-linked a isoform X9

    UniProtKB/TrEMBL
    A0A1S3NXK1
    Related
    ENSSSAP00000114070.1, ENSSSAT00000149147.2
    Conserved Domains (2) summary
    cd18787
    Location:396 → 542
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:138 → 391
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  2. XM_014164504.2 → XP_014019979.1  DEAD-box helicase 3 X-linked a isoform X7

    UniProtKB/TrEMBL
    A0A1S3NX71
    Related
    ENSSSAP00000159289.1, ENSSSAT00000174505.1
    Conserved Domains (2) summary
    cd18787
    Location:433 → 579
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:175 → 428
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  3. XM_014164505.2 → XP_014019980.1  DEAD-box helicase 3 X-linked a isoform X8

    UniProtKB/TrEMBL
    A0A1S3NXI5
    Related
    ENSSSAP00000114156.2, ENSSSAT00000149240.2
    Conserved Domains (3) summary
    PRK10590
    Location:203 → 625
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:204 → 429
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:451 → 561
    Helicase_C; Helicase conserved C-terminal domain

  4. XM_045704549.1 → XP_045560505.1  DEAD-box helicase 3 X-linked a isoform X6

  5. XM_014164502.2 → XP_014019977.1  DEAD-box helicase 3 X-linked a isoform X4

    UniProtKB/TrEMBL
    A0A1S3NX56
    Related
    ENSSSAP00000114166.2, ENSSSAT00000149250.2
    Conserved Domains (3) summary
    PRK10590
    Location:219 → 657
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:220 → 445
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:496 → 593
    Helicase_C; Helicase conserved C-terminal domain

  6. XM_014164503.2 → XP_014019978.1  DEAD-box helicase 3 X-linked a isoform X5

    UniProtKB/TrEMBL
    A0A1S3NX48
    Conserved Domains (2) summary
    cd18787
    Location:453 → 599
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:195 → 448
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  7. XM_014164500.2 → XP_014019975.1  DEAD-box helicase 3 X-linked a isoform X3

    UniProtKB/TrEMBL
    A0A1S3NXI0
    Conserved Domains (3) summary
    PRK10590
    Location:223 → 661
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:224 → 449
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:500 → 597
    Helicase_C; Helicase conserved C-terminal domain

  8. XM_014164501.2 → XP_014019976.1  DEAD-box helicase 3 X-linked a isoform X2

    UniProtKB/TrEMBL
    A0A1S3NXJ6
    Related
    ENSSSAP00000114061.1, ENSSSAT00000149137.2
    Conserved Domains (3) summary
    PRK10590
    Location:239 → 661
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:240 → 465
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:487 → 597
    Helicase_C; Helicase conserved C-terminal domain

  9. XM_014164499.2 → XP_014019974.1  DEAD-box helicase 3 X-linked a isoform X1

    UniProtKB/TrEMBL
    A0A1S3NX65
    Related
    ENSSSAP00000114044.2, ENSSSAT00000149115.2
    Conserved Domains (3) summary
    PRK10590
    Location:239 → 677
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:240 → 465
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:516 → 613
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

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