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ptprz1a protein tyrosine phosphatase receptor type Z1a [ Salmo salar (Atlantic salmon) ]

Gene ID: 106561022, updated on 30-Nov-2023

Summary

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Gene symbol
ptprz1a
Gene description
protein tyrosine phosphatase receptor type Z1a
See related
Ensembl:ENSSSAG00000080236
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
ptprz1
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Genomic context

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Location:
chromosome: ssa10
Exon count:
32
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (78120480..78196121, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (70455829..70532366, complement)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent secretion activator 2 Neighboring gene fez family zinc finger protein 1 Neighboring gene dihydrolipoyl dehydrogenase, mitochondrial Neighboring gene zinc finger protein OZF-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase zeta
Names
protein tyrosine phosphatase receptor type Z1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    78120480..78196121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014124572.2 → XP_013980047.1  receptor-type tyrosine-protein phosphatase zeta isoform X3

    UniProtKB/TrEMBL
    A0A1S3KN47
    Conserved Domains (5) summary
    smart00194
    Location:1183 → 1457
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:1218 → 1457
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain
    pfam15229
    Location:589 → 681
    POM121; POM121 family

  2. XM_014124571.2 → XP_013980046.1  receptor-type tyrosine-protein phosphatase zeta isoform X2

    UniProtKB/TrEMBL
    A0A1S3KMU4
    Related
    ENSSSAP00000117418.2, ENSSSAT00000152627.2
    Conserved Domains (5) summary
    smart00194
    Location:1214 → 1481
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:1242 → 1481
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain
    pfam15229
    Location:589 → 681
    POM121; POM121 family

  3. XM_014124570.2 → XP_013980045.1  receptor-type tyrosine-protein phosphatase zeta isoform X1

    UniProtKB/TrEMBL
    A0A1S3KN66
    Conserved Domains (5) summary
    smart00194
    Location:1214 → 1488
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:1249 → 1488
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain
    pfam15229
    Location:589 → 681
    POM121; POM121 family

  4. XM_045688111.1 → XP_045544067.1  receptor-type tyrosine-protein phosphatase zeta isoform X4

    UniProtKB/TrEMBL
    A0A1S3KN05
    Conserved Domains (4) summary
    PHA03307
    Location:339 → 595
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00041
    Location:225 → 307
    fn3; Fibronectin type III domain
    cl00012
    Location:2 → 210
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
    cl28904
    Location:1132 → 1400
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  5. XM_014124573.2 → XP_013980048.1  receptor-type tyrosine-protein phosphatase zeta isoform X4

    UniProtKB/TrEMBL
    A0A1S3KN05
    Conserved Domains (4) summary
    PHA03307
    Location:339 → 595
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00041
    Location:225 → 307
    fn3; Fibronectin type III domain
    cl00012
    Location:2 → 210
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
    cl28904
    Location:1132 → 1400
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  6. XM_014124574.2 → XP_013980049.1  receptor-type tyrosine-protein phosphatase zeta isoform X5

    UniProtKB/TrEMBL
    A0A1S3KNZ0
    Conserved Domains (5) summary
    smart00194
    Location:909 → 1183
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:944 → 1183
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain
    pfam17084
    Location:482 → 817
    TDA11; Topoisomerase I damage affected protein 11

  7. XM_014124576.2 → XP_013980051.1  receptor-type tyrosine-protein phosphatase zeta isoform X7

    UniProtKB/TrEMBL
    A0A1S3KMU9
    Conserved Domains (4) summary
    smart00194
    Location:731 → 998
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:759 → 998
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain

  8. XM_045688113.1 → XP_045544069.1  receptor-type tyrosine-protein phosphatase zeta isoform X8

  9. XM_014124575.2 → XP_013980050.1  receptor-type tyrosine-protein phosphatase zeta isoform X6

    UniProtKB/TrEMBL
    A0A1S3KN71
    Related
    ENSSSAP00000117368.2, ENSSSAT00000152576.2
    Conserved Domains (4) summary
    smart00194
    Location:731 → 1005
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:766 → 1005
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd03122
    Location:48 → 301
    alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
    pfam00041
    Location:316 → 398
    fn3; Fibronectin type III domain
Nucleotide Protein
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