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atf3 activating transcription factor 3 [ Austrofundulus limnaeus ]

Gene ID: 106534120, updated on 13-Mar-2024

Summary

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Gene symbol
atf3
Gene description
activating transcription factor 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013953495.1 (41071..45030)

NW_013953495.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis protein 9-like Neighboring gene solute carrier family 15 member 1-like Neighboring gene kinetochore-associated protein NSL1 homolog Neighboring gene kinetochore-associated protein NSL1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013953495.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013953495.1 Reference Austrofundulus_limnaeus-1.0

    Range
    41071..45030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014030641.1 → XP_013886095.1  cyclic AMP-dependent transcription factor ATF-3

    UniProtKB/TrEMBL
    A0A2I4D1G6
    Conserved Domains (1) summary
    cd14722
    Location:102 → 155
    bZIP_ATF3; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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