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cxcl12a chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [ Austrofundulus limnaeus ]

Gene ID: 106524057, updated on 13-Mar-2024

Summary

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Gene symbol
cxcl12a
Gene description
chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Also known as
cxcl12
Orthologs
human zebrafish all
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Genomic context

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See cxcl12a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952402.1 (3555238..3560470)

NW_013952402.1Genomic Context describing neighboring genes Neighboring gene F-box protein 9 Neighboring gene transmembrane protein 72 Neighboring gene excision repair cross-complementation group 6 Neighboring gene dorsal root ganglia homeobox

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952402.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemoattractant activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chemokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in induction of positive chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stromal cell-derived factor 1
Names
C-X-C motif chemokine ligand 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952402.1 Reference Austrofundulus_limnaeus-1.0

    Range
    3555238..3560470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014017734.1 → XP_013873188.1  stromal cell-derived factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I4BZL4
    Conserved Domains (1) summary
    cl00134
    Location:30 → 90
    Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...

  2. XM_014017813.1 → XP_013873267.1  stromal cell-derived factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I4BZU0
    Conserved Domains (1) summary
    cl00134
    Location:29 → 89
    Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...
Nucleotide Protein
Heading Accession and Version

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