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odc1 ornithine decarboxylase 1 [ Austrofundulus limnaeus ]

Gene ID: 106518751, updated on 13-Mar-2024

Summary

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Gene symbol
odc1
Gene description
ornithine decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952404.1 (1683135..1691056, complement)

NW_013952404.1Genomic Context describing neighboring genes Neighboring gene matrilin 3 Neighboring gene uncharacterized LOC106518745 Neighboring gene nucleolar protein 10 Neighboring gene ATPase H+ transporting V1 subunit C2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952404.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ornithine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine biosynthetic process from ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ornithine decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952404.1 Reference Austrofundulus_limnaeus-1.0

    Range
    1683135..1691056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014010157.1 → XP_013865611.1  ornithine decarboxylase

    UniProtKB/TrEMBL
    A0A2I4BCY9
    Conserved Domains (2) summary
    cd00622
    Location:38 → 409
    PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
    COG0019
    Location:40 → 409
    LysA; Diaminopimelate decarboxylase [Amino acid transport and metabolism]

  2. XM_014010151.1 → XP_013865605.1  ornithine decarboxylase

    UniProtKB/TrEMBL
    A0A2I4BCY9
    Conserved Domains (2) summary
    cd00622
    Location:38 → 409
    PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
    COG0019
    Location:40 → 409
    LysA; Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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