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sdcbp2 syndecan binding protein (syntenin) 2 [ Austrofundulus limnaeus ]

Gene ID: 106518327, updated on 13-Mar-2024

Summary

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Gene symbol
sdcbp2
Gene description
syndecan binding protein (syntenin) 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Also known as
sdcbp
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See sdcbp2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952404.1 (323983..342342, complement)

NW_013952404.1Genomic Context describing neighboring genes Neighboring gene neurotensin receptor 1 (high affinity) Neighboring gene uncharacterized LOC106518321 Neighboring gene syntaphilin b Neighboring gene FKBP prolyl isomerase 1Ab Neighboring gene NSFL1 (p97) cofactor (p47)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952404.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952404.1 Reference Austrofundulus_limnaeus-1.0

    Range
    323983..342342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014009578.1 → XP_013865032.1  syntenin-1

    UniProtKB/TrEMBL
    A0A2I4BBD0
    Conserved Domains (1) summary
    cd00992
    Location:116 → 174
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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