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nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 [ Austrofundulus limnaeus ]

Gene ID: 106517775, updated on 19-Oct-2023

Summary

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Gene symbol
nhlrc1
Gene description
NHL repeat containing E3 ubiquitin protein ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See nhlrc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952454.1 (2006451..2007764, complement)

NW_013952454.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1b (glutamate binding) Neighboring gene RNA binding motif protein 24b Neighboring gene kinesin family member 13A Neighboring gene phosphatidylserine synthase 1a Neighboring gene uncharacterized LOC106517776

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952454.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase NHLRC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952454.1 Reference Austrofundulus_limnaeus-1.0

    Range
    2006451..2007764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014008780.1 → XP_013864234.1  E3 ubiquitin-protein ligase NHLRC1

    UniProtKB/TrEMBL
    A0A2I4B909
    Conserved Domains (2) summary
    cd14961
    Location:127 → 394
    NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
    pfam14634
    Location:26 → 75
    zf-RING_5; zinc-RING finger domain
Nucleotide Protein
Heading Accession and Version

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