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pde10a phosphodiesterase 10A [ Austrofundulus limnaeus ]

Gene ID: 106515936, updated on 18-Sep-2024

Summary

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Gene symbol
pde10a
Gene description
phosphodiesterase 10A
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952435.1 (2441449..2516592, complement)

NW_013952435.1Genomic Context describing neighboring genes Neighboring gene oncoprotein induced transcript 3 Neighboring gene phospholipase A2, group XIIB Neighboring gene T-box transcription factor Tb Neighboring gene proline rich 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952435.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952435.1 Reference Austrofundulus_limnaeus-1.0

    Range
    2441449..2516592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014006011.1 → XP_013861465.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X2

    UniProtKB/TrEMBL
    A0A2I4B127
    Conserved Domains (3) summary
    smart00065
    Location:280 → 435
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    COG2203
    Location:155 → 260
    FhlA; GAF domain [Signal transduction mechanisms]
    pfam00233
    Location:527 → 759
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_014006010.1 → XP_013861464.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X1

    UniProtKB/TrEMBL
    A0A2I4B144
    Conserved Domains (3) summary
    smart00065
    Location:281 → 436
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    COG2203
    Location:156 → 261
    FhlA; GAF domain [Signal transduction mechanisms]
    pfam00233
    Location:528 → 760
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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