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nxf1a nuclear RNA export factor 1a [ Austrofundulus limnaeus ]

Gene ID: 106515852, updated on 13-Mar-2024

Summary

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Gene symbol
nxf1a
Gene description
nuclear RNA export factor 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Also known as
nxf1; zgc:153681
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952403.1 (3932723..3949874, complement)

NW_013952403.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase activator subunit 11-2 Neighboring gene autophagy related 2A Neighboring gene inositol-trisphosphate 3-kinase A-like Neighboring gene seipin-like Neighboring gene ribonuclease H2, subunit C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952403.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952403.1 Reference Austrofundulus_limnaeus-1.0

    Range
    3932723..3949874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014005886.1 → XP_013861340.1  nuclear RNA export factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I4B0R0
    Conserved Domains (6) summary
    smart00804
    Location:601 → 663
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:267 → 309
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:159 → 240
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:308 → 354
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:308 → 370
    LRR_8; Leucine rich repeat
    cl09109
    Location:433 → 583
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  2. XM_014005893.1 → XP_013861347.1  nuclear RNA export factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I4B0S7
    Conserved Domains (6) summary
    smart00804
    Location:567 → 629
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:233 → 275
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:125 → 206
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:274 → 320
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:274 → 336
    LRR_8; Leucine rich repeat
    cl09109
    Location:399 → 549
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
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