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adamtsl4 ADAMTS-like 4 [ Austrofundulus limnaeus ]

Gene ID: 106515086, updated on 13-Mar-2024

Summary

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Gene symbol
adamtsl4
Gene description
ADAMTS-like 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952428.1 (911216..1009184)

NW_013952428.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 14 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene CUGBP Elav-like family member 3 Neighboring gene ceramide synthase 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952428.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952428.1 Reference Austrofundulus_limnaeus-1.0

    Range
    911216..1009184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014004705.1 → XP_013860159.1  ADAMTS-like protein 4

    UniProtKB/TrEMBL
    A0A2I4AXG1
    Conserved Domains (4) summary
    smart00209
    Location:48 → 72
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:539 → 658
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1106 → 1136
    PLAC; PLAC (protease and lacunin) domain
    pfam15502
    Location:108 → 220
    MPLKIP; M-phase-specific PLK1-interacting protein
Nucleotide Protein
Heading Accession and Version

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