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bicc1 BicC family RNA binding protein 1 [ Austrofundulus limnaeus ]

Gene ID: 106512901, updated on 19-Oct-2023

Summary

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Gene symbol
bicc1
Gene description
BicC family RNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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See bicc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952402.1 (7507952..7573424)

NW_013952402.1Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 7a Neighboring gene ubiquitin-conjugating enzyme E2 D4-like Neighboring gene uncharacterized LOC106512925 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein like Neighboring gene family with sequence similarity 13 member C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952402.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bicaudal C homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952402.1 Reference Austrofundulus_limnaeus-1.0

    Range
    7507952..7573424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014001434.1 → XP_013856888.1  protein bicaudal C homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I4AN30
    Conserved Domains (4) summary
    cd09520
    Location:872 → 936
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    smart00454
    Location:876 → 933
    SAM; Sterile alpha motif
    cd02394
    Location:135 → 201
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    cl00098
    Location:79 → 124
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  2. XM_014001443.1 → XP_013856897.1  protein bicaudal C homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I4AN17
    Conserved Domains (4) summary
    cd09520
    Location:868 → 932
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    smart00454
    Location:872 → 929
    SAM; Sterile alpha motif
    cd02394
    Location:135 → 201
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    cl00098
    Location:79 → 124
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
Nucleotide Protein
Heading Accession and Version

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