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LOC106444110 transcription factor TCP18 [ Brassica napus (rape) ]

Gene ID: 106444110, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106444110
Gene description
transcription factor TCP18
Locus tag
HID58_011486
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106444110 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A3 NC_063436.1 (18606245..18608953)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A3 NC_027759.2 (26887002..26889159)

Chromosome A3 - NC_063436.1Genomic Context describing neighboring genes Neighboring gene small polypeptide DEVIL 7-like Neighboring gene histone deacetylase 15-like Neighboring gene DNA mismatch repair protein MSH2 Neighboring gene oleosin G Neighboring gene early nodulin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP18
Names
BnaA03g34820D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063436.1 Reference Da-Ae Primary Assembly

    Range
    18606245..18608953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013885629.3 → XP_013741083.1  transcription factor TCP18 isoform X1

    UniProtKB/TrEMBL
    A0A816W3T4
    Conserved Domains (1) summary
    pfam03634
    Location:154 → 318
    TCP; TCP family transcription factor

  2. XM_013885631.3 → XP_013741085.1  transcription factor TCP18 isoform X2

    Conserved Domains (1) summary
    pfam03634
    Location:155 → 315
    TCP; TCP family transcription factor
Nucleotide Protein
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