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Sema6c semaphorin 6C [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105984732, updated on 13-Mar-2024

Summary

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Gene symbol
Sema6c
Gene description
semaphorin 6C
See related
Ensembl:ENSDORG00000015324
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267242.1 (11819694..11831077, complement)

NW_012267242.1Genomic Context describing neighboring genes Neighboring gene CDC42 small effector 1 Neighboring gene MLLT11 transcription factor 7 cofactor Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene LysM domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267242.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267242.1 Reference Dord_2.0

    Range
    11819694..11831077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013015008.1 → XP_012870462.1  semaphorin-6C

    UniProtKB/TrEMBL
    A0A1S3F3U4
    Related
    ENSDORP00000014427.2, ENSDORT00000015329.2
    Conserved Domains (2) summary
    cd11268
    Location:55 → 519
    Sema_6C; The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)
    pfam01437
    Location:520 → 548
    PSI; Plexin repeat
Nucleotide Protein
Heading Accession and Version

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