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tbc1d30 TBC1 domain family, member 30 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105936722, updated on 20-Aug-2024

Summary

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Gene symbol
tbc1d30
Gene description
TBC1 domain family, member 30
See related
EnsemblRapid:ENSFHEG00000009361
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See tbc1d30 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 17 NC_046377.1 (23723909..23743138)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234461.1 (558623..578384)

Chromosome 17 - NC_046377.1Genomic Context describing neighboring genes Neighboring gene protein-methionine sulfoxide oxidase mical3a Neighboring gene leukotriene A4 hydrolase Neighboring gene protein kinase C, theta Neighboring gene Scm like with four mbt domains 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046377.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    23723909..23743138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036148973.1 → XP_036004866.1  TBC1 domain family member 30 isoform X2

    Conserved Domains (2) summary
    pfam00566
    Location:285 → 465
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam15733
    Location:623 → 774
    DUF4682; Domain of unknown function (DUF4682)

  2. XM_036148972.1 → XP_036004865.1  TBC1 domain family member 30 isoform X1

    Conserved Domains (2) summary
    pfam00566
    Location:285 → 465
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam15733
    Location:624 → 775
    DUF4682; Domain of unknown function (DUF4682)

  3. XM_036148974.1 → XP_036004867.1  TBC1 domain family member 30 isoform X3

    Related
    ENSFHEP00000037360.1, ENSFHET00000062669.1
    Conserved Domains (2) summary
    pfam00566
    Location:285 → 465
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam15733
    Location:624 → 746
    DUF4682; Domain of unknown function (DUF4682)

  4. XM_021324138.2 → XP_021179813.2  TBC1 domain family member 30 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2P710
    Related
    ENSFHEP00000008149.2, ENSFHET00000002623.2
    Conserved Domains (2) summary
    pfam00566
    Location:135 → 315
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam15733
    Location:474 → 625
    DUF4682; Domain of unknown function (DUF4682)

  5. XM_021324140.2 → XP_021179815.2  TBC1 domain family member 30 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2P710
    Related
    ENSFHEP00000035431.1, ENSFHET00000070368.1
    Conserved Domains (2) summary
    pfam00566
    Location:135 → 315
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam15733
    Location:474 → 596
    DUF4682; Domain of unknown function (DUF4682)
Nucleotide Protein
Heading Accession and Version

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