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LOC105933210 homeobox protein otx5-A [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105933210, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105933210
Gene description
homeobox protein otx5-A
See related
EnsemblRapid:ENSFHEG00000031449
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 18 NC_046378.1 (6075986..6080594, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234374.1 (159768..163365, complement)

Chromosome 18 - NC_046378.1Genomic Context describing neighboring genes Neighboring gene histone H3.3A Neighboring gene uncharacterized LOC118566799 Neighboring gene proteasome subunit alpha type-6-like Neighboring gene cilia- and flagella-associated protein 251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein otx5-A
Names
Homeobox protein OTX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046378.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    6075986..6080594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021321526.2 → XP_021177201.2  homeobox protein otx5-A isoform X1

    Related
    ENSFHEP00000043606.1, ENSFHET00000066152.1
    Conserved Domains (2) summary
    pfam00046
    Location:48 → 100
    Homeobox; Homeobox domain
    pfam03529
    Location:166 → 248
    TF_Otx; Otx1 transcription factor

  2. XM_012872644.3 → XP_012728098.2  homeobox protein otx5-A isoform X2

    Related
    ENSFHEP00000052538.1, ENSFHET00000069384.1
    Conserved Domains (2) summary
    pfam00046
    Location:43 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:161 → 243
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
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