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seh1l SEH1-like (S. cerevisiae) [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105933141, updated on 20-Aug-2024

Summary

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Gene symbol
seh1l
Gene description
SEH1-like (S. cerevisiae)
See related
EnsemblRapid:ENSFHEG00000018771
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 3 NC_046363.1 (5715807..5728100)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234372.1 (1355289..1365916)

Chromosome 3 - NC_046363.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 76 Neighboring gene protein tyrosine phosphatase non-receptor type 2a Neighboring gene centrosomal protein 192 Neighboring gene inhibitor of DNA binding 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Seh1-associated complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin SEH1
Names
Nucleoporin SEH1
SEH1 like nucleoporin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046363.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    5715807..5728100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012872545.3 → XP_012727999.1  nucleoporin SEH1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2PTT9
    Related
    ENSFHEP00000017036.2, ENSFHET00000025616.2
    Conserved Domains (3) summary
    COG2319
    Location:11 → 342
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:15 → 55
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:11 → 305
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_021321484.2 → XP_021177159.1  nucleoporin SEH1 isoform X2

    UniProtKB/TrEMBL
    A0A146W0E4, A0A3Q2PTT9
    Related
    ENSFHEP00000017046.1, ENSFHET00000025630.2
    Conserved Domains (2) summary
    sd00039
    Location:15 → 55
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:11 → 305
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_004928358.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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