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LOC105927933 collagen alpha-1(XXV) chain [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105927933, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105927933
Gene description
collagen alpha-1(XXV) chain
See related
EnsemblRapid:ENSFHEG00000032275
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
col25a1
Orthologs
human zebrafish all
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Genomic context

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See LOC105927933 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
42
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 14 NC_046374.1 (22531188..22773846, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234286.1 (2152732..2383299, complement)

Chromosome 14 - NC_046374.1Genomic Context describing neighboring genes Neighboring gene ethanolamine-phosphate phospho-lyase Neighboring gene oligosaccharyltransferase complex subunit Neighboring gene uncharacterized LOC105927905 Neighboring gene La ribonucleoprotein 7, transcriptional regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(XXV) chain
Names
collagen type XXV alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046374.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    22531188..22773846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036146555.1 → XP_036002448.1  collagen alpha-1(XXV) chain isoform X5

    Conserved Domains (1) summary
    pfam01391
    Location:586 → 640
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_036146565.1 → XP_036002458.1  collagen alpha-1(XXV) chain isoform X16

    Conserved Domains (2) summary
    PHA03169
    Location:253 → 391
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:559 → 613
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_036146553.1 → XP_036002446.1  collagen alpha-1(XXV) chain isoform X3

    Conserved Domains (1) summary
    pfam01391
    Location:590 → 644
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_036146558.1 → XP_036002451.1  collagen alpha-1(XXV) chain isoform X8

    Conserved Domains (2) summary
    PTZ00449
    Location:227 → 318
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam01391
    Location:579 → 633
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_021317685.2 → XP_021173360.2  collagen alpha-1(XXV) chain isoform X1

    Conserved Domains (1) summary
    pfam01391
    Location:594 → 648
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_021317687.2 → XP_021173362.2  collagen alpha-1(XXV) chain isoform X4

    Conserved Domains (1) summary
    pfam01391
    Location:594 → 648
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_036146561.1 → XP_036002454.1  collagen alpha-1(XXV) chain isoform X13

    Conserved Domains (2) summary
    PHA03169
    Location:237 → 380
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:556 → 610
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_036146559.1 → XP_036002452.1  collagen alpha-1(XXV) chain isoform X9

    Conserved Domains (1) summary
    pfam01391
    Location:603 → 659
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_021317686.2 → XP_021173361.2  collagen alpha-1(XXV) chain isoform X2

    Conserved Domains (1) summary
    pfam01391
    Location:603 → 659
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_036146556.1 → XP_036002449.1  collagen alpha-1(XXV) chain isoform X6

    Conserved Domains (1) summary
    pfam01391
    Location:603 → 659
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_036146564.1 → XP_036002457.1  collagen alpha-1(XXV) chain isoform X15

    Conserved Domains (2) summary
    PHA03169
    Location:233 → 376
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:561 → 617
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_036146560.1 → XP_036002453.1  collagen alpha-1(XXV) chain isoform X12

    Conserved Domains (2) summary
    PHA03169
    Location:253 → 391
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:567 → 621
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_021317691.2 → XP_021173366.2  collagen alpha-1(XXV) chain isoform X10

    Conserved Domains (2) summary
    PHA03169
    Location:257 → 395
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:571 → 625
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_036146557.1 → XP_036002450.1  collagen alpha-1(XXV) chain isoform X7

    Conserved Domains (1) summary
    pfam01391
    Location:585 → 639
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_021317695.2 → XP_021173370.2  collagen alpha-1(XXV) chain isoform X11

    Conserved Domains (2) summary
    PHA03169
    Location:257 → 395
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:580 → 636
    Collagen; Collagen triple helix repeat (20 copies)

  16. XM_036146562.1 → XP_036002455.1  collagen alpha-1(XXV) chain isoform X14

    Related
    ENSFHEP00000061972.1, ENSFHET00000064267.1
    Conserved Domains (1) summary
    pfam01391
    Location:451 → 505
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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