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crtac1b cartilage acidic protein 1b [ Clupea harengus (Atlantic herring) ]

Gene ID: 105904359, updated on 18-Jun-2024

Summary

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Gene symbol
crtac1b
Gene description
cartilage acidic protein 1b
See related
Ensembl:ENSCHAG00020022510
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
crtac1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 13 NC_045164.1 (18827733..18858263)

Chromosome 13 - NC_045164.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105904368 Neighboring gene lysyl oxidase-like 4 Neighboring gene golgin A7 family, member Bb Neighboring gene secreted frizzled-related protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045164.1 Chromosome 13 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonal fasciculation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage acidic protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045164.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    18827733..18858263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031578542.2 → XP_031434402.1  cartilage acidic protein 1

    UniProtKB/TrEMBL
    A0A6P8GG24
    Related
    ENSCHAP00020051585.1, ENSCHAT00020055319.1
    Conserved Domains (3) summary
    pfam07645
    Location:553 → 599
    EGF_CA; Calcium-binding EGF domain
    pfam07593
    Location:454 → 505
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:248 → 304
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Nucleotide Protein
Heading Accession and Version

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