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igfals insulin-like growth factor binding protein, acid labile subunit [ Clupea harengus (Atlantic herring) ]

Gene ID: 105899290, updated on 18-Jun-2024

Summary

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Gene symbol
igfals
Gene description
insulin-like growth factor binding protein, acid labile subunit
See related
Ensembl:ENSCHAG00020017801
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See igfals in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (25580715..25587738)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene E3 SUMO-protein ligase ZBED1-like Neighboring gene ubiquitin specific peptidase 31 Neighboring gene G protein-coupled receptor 146 Neighboring gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
insulin-like growth factor-binding protein complex acid labile subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    25580715..25587738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012826449.3 → XP_012681903.1  insulin-like growth factor-binding protein complex acid labile subunit isoform X1

    UniProtKB/TrEMBL
    A0A6P3VUT4
    Conserved Domains (5) summary
    smart00013
    Location:51 → 87
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:540 → 552
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:135 → 158
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:422 → 481
    LRR_8; Leucine rich repeat
    NF033189
    Location:108 → 434
    internalin_A; class 1 internalin InlA

  2. XM_042708404.1 → XP_042564338.1  insulin-like growth factor-binding protein complex acid labile subunit isoform X2

    UniProtKB/TrEMBL
    A0A6P3VUZ5
    Conserved Domains (5) summary
    smart00013
    Location:32 → 68
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:521 → 533
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:116 → 139
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:89 → 415
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:402 → 462
    LRR_8; Leucine rich repeat

  3. XM_031573381.2 → XP_031429241.1  insulin-like growth factor-binding protein complex acid labile subunit isoform X2

    UniProtKB/TrEMBL
    A0A6P3VUZ5
    Related
    ENSCHAP00020040282.1, ENSCHAT00020043194.1
    Conserved Domains (5) summary
    smart00013
    Location:32 → 68
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:521 → 533
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:116 → 139
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:89 → 415
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:402 → 462
    LRR_8; Leucine rich repeat

  4. XM_012826451.3 → XP_012681905.1  insulin-like growth factor-binding protein complex acid labile subunit isoform X2

    See identical proteins and their annotated locations for XP_012681905.1

    UniProtKB/TrEMBL
    A0A6P3VUZ5
    Conserved Domains (5) summary
    smart00013
    Location:32 → 68
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:521 → 533
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:116 → 139
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:89 → 415
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:402 → 462
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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