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LOC105897774 trans-L-3-hydroxyproline dehydratase [ Clupea harengus (Atlantic herring) ]

Gene ID: 105897774, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105897774
Gene description
trans-L-3-hydroxyproline dehydratase
See related
Ensembl:ENSCHAG00020016272
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
l3hypdh
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 15 NC_045166.1 (11036880..11039829)

Chromosome 15 - NC_045166.1Genomic Context describing neighboring genes Neighboring gene nesprin-2 Neighboring gene 5S ribosomal RNA Neighboring gene spectrin repeat containing, nuclear envelope 2a Neighboring gene dishevelled associated activator of morphogenesis 1b Neighboring gene protein phosphatase 1, regulatory subunit 13Bb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045166.1 Chromosome 15 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trans-L-3-hydroxyproline dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045166.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    11036880..11039829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012824740.2 → XP_012680194.1  trans-L-3-hydroxyproline dehydratase

    UniProtKB/TrEMBL
    A0A6P3VSF8
    Related
    ENSCHAP00020036701.1, ENSCHAT00020039252.1
    Conserved Domains (1) summary
    pfam05544
    Location:16 → 343
    Pro_racemase; Proline racemase
Nucleotide Protein
Heading Accession and Version

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