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specc1 sperm antigen with calponin homology and coiled-coil domains 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105895321, updated on 12-Sep-2024

Summary

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Gene symbol
specc1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
See related
Ensembl:ENSCHAG00020026053
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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See specc1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 8 NC_045159.1 (3948921..4028954)

Chromosome 8 - NC_045159.1Genomic Context describing neighboring genes Neighboring gene gamma-crystallin M3-like Neighboring gene interferon-induced protein with tetratricopeptide repeats 1B-like Neighboring gene adenosine A2b receptor Neighboring gene zinc finger, SWIM-type containing 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045159.1 Chromosome 8 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytospin-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045159.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    3948921..4028954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031571546.2 → XP_031427406.1  cytospin-B isoform X1

    UniProtKB/TrEMBL
    A0A6P8FVE2
    Related
    ENSCHAP00020059603.1, ENSCHAT00020064294.1
    Conserved Domains (2) summary
    cd00014
    Location:943 → 1043
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR02168
    Location:353 → 700
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_031571548.2 → XP_031427408.1  cytospin-B isoform X1

    UniProtKB/TrEMBL
    A0A6P8FVE2
    Conserved Domains (2) summary
    cd00014
    Location:943 → 1043
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR02168
    Location:353 → 700
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_031571547.2 → XP_031427407.1  cytospin-B isoform X1

    UniProtKB/TrEMBL
    A0A6P8FVE2
    Conserved Domains (2) summary
    cd00014
    Location:943 → 1043
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR02168
    Location:353 → 700
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_031571549.2 → XP_031427409.1  cytospin-B isoform X2

    UniProtKB/TrEMBL
    A0A6P8FMG3
    Related
    ENSCHAP00020059599.1, ENSCHAT00020064290.1
    Conserved Domains (2) summary
    cd00014
    Location:863 → 963
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR02168
    Location:273 → 620
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version

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