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ptpn18 protein tyrosine phosphatase non-receptor type 18 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105889740, updated on 18-Jun-2024

Summary

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Gene symbol
ptpn18
Gene description
protein tyrosine phosphatase non-receptor type 18
See related
Ensembl:ENSCHAG00020028451
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 4 NC_045155.1 (5127108..5140828, complement)

Chromosome 4 - NC_045155.1Genomic Context describing neighboring genes Neighboring gene pregnancy up-regulated nonubiquitous CaM kinase Neighboring gene plexin A3 Neighboring gene MON1 secretory trafficking family member Ba Neighboring gene GRIP1 associated protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045155.1 Chromosome 4 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables non-membrane spanning protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045155.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    5127108..5140828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031565872.2 → XP_031421732.1  tyrosine-protein phosphatase non-receptor type 18

    UniProtKB/TrEMBL
    A0A6P8FET3
    Related
    ENSCHAP00020064343.1, ENSCHAT00020070021.1
    Conserved Domains (1) summary
    cl28904
    Location:24 → 288
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
Nucleotide Protein
Heading Accession and Version

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