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LOC105889227 rho GTPase-activating protein 21 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105889227, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105889227
Gene description
rho GTPase-activating protein 21
See related
Ensembl:ENSCHAG00020006318
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
arhgap21
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Genomic context

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Location:
chromosome: 17
Exon count:
26
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 17 NC_045168.1 (12879405..12982623, complement)

Chromosome 17 - NC_045168.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 158a Neighboring gene patched domain-containing protein 3-like Neighboring gene patched domain-containing protein 3-like Neighboring gene phosphoribosyl transferase domain containing 1a Neighboring gene enkurin, TRPC channel interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045168.1 Chromosome 17 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: rho GTPase-activating protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045168.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    12879405..12982623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012815027.3 → XP_012670481.2  LOW QUALITY PROTEIN: rho GTPase-activating protein 21

    UniProtKB/TrEMBL
    A0A6P3VG20
    Related
    ENSCHAP00020013330.1, ENSCHAT00020014228.1
    Conserved Domains (5) summary
    PHA03247
    Location:198 → 383
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:58 → 164
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1185 → 1381
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:969 → 1083
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain
    pfam17061
    Location:1622 → 1736
    PARM
Nucleotide Protein
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