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exosc3 exosome component 3 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105888627, updated on 18-Jun-2024

Summary

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Gene symbol
exosc3
Gene description
exosome component 3
See related
Ensembl:ENSCHAG00020012068
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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See exosc3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 6 NC_045157.1 (11370495..11372683)

Chromosome 6 - NC_045157.1Genomic Context describing neighboring genes Neighboring gene nipsnap homolog 3A (C. elegans) Neighboring gene probable pancreatic secretory proteinase inhibitor Neighboring gene DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like Neighboring gene RE1-silencing transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045157.1 Chromosome 6 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045157.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    11370495..11372683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012814366.3 → XP_012669820.1  exosome complex component RRP40

    UniProtKB/TrEMBL
    A0A6P3VEG8
    Related
    ENSCHAP00020026058.1, ENSCHAT00020028076.1
    Conserved Domains (2) summary
    COG1097
    Location:10 → 238
    Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
    cd05790
    Location:72 → 157
    S1_Rrp40; Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
Nucleotide Protein
Heading Accession and Version

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