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SLC6A1 solute carrier family 6 member 1 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105882654, updated on 13-Mar-2024

Summary

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Gene symbol
SLC6A1
Gene description
solute carrier family 6 member 1
See related
Ensembl:ENSMICG00000003055
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 23 NC_033682.1 (14206966..14245644)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012197975.1 (1000598..1040860)

Chromosome 23 - NC_033682.1Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene uncharacterized LOC105882652 Neighboring gene solute carrier family 6 member 11 Neighboring gene uncharacterized LOC105882663 Neighboring gene histamine receptor H1 Neighboring gene uncharacterized LOC105882664 Neighboring gene autophagy related 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gamma-aminobutyric acid:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent GABA transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033682.1 Reference Mmur_3.0 Primary Assembly

    Range
    14206966..14245644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012785230.2 → XP_012640684.1  sodium- and chloride-dependent GABA transporter 1 isoform X1

    See identical proteins and their annotated locations for XP_012640684.1

    UniProtKB/TrEMBL
    A0A8C5UN70
    Conserved Domains (1) summary
    cd11506
    Location:2 → 600
    SLC6sbd_GAT1; Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

  2. XM_012785232.2 → XP_012640686.1  sodium- and chloride-dependent GABA transporter 1 isoform X1

    See identical proteins and their annotated locations for XP_012640686.1

    UniProtKB/TrEMBL
    A0A8C5UN70
    Conserved Domains (1) summary
    cd11506
    Location:2 → 600
    SLC6sbd_GAT1; Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

  3. XM_012785233.2 → XP_012640687.1  sodium- and chloride-dependent GABA transporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A8B7HRY7
    Conserved Domains (1) summary
    cl00456
    Location:2 → 509
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_012785229.2 → XP_012640683.1  sodium- and chloride-dependent GABA transporter 1 isoform X1

    See identical proteins and their annotated locations for XP_012640683.1

    UniProtKB/TrEMBL
    A0A8C5UN70
    Related
    ENSMICP00000002781.2, ENSMICT00000003056.3
    Conserved Domains (1) summary
    cd11506
    Location:2 → 600
    SLC6sbd_GAT1; Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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