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PDS5B PDS5 cohesin associated factor B [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105864324, updated on 13-Mar-2024

Summary

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Gene symbol
PDS5B
Gene description
PDS5 cohesin associated factor B
See related
Ensembl:ENSMICG00000005747
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
40
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 13 NC_033672.1 (73567123..73737421, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012202375.1 (416832..563208, complement)

Chromosome 13 - NC_033672.1Genomic Context describing neighboring genes Neighboring gene StAR related lipid transfer domain containing 13 Neighboring gene uncharacterized LOC105863993 Neighboring gene klotho Neighboring gene uncharacterized LOC105864325 Neighboring gene NEDD4 binding protein 2 like 2 Neighboring gene NEDD4 binding protein 2 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033672.1 Reference Mmur_3.0 Primary Assembly

    Range
    73567123..73737421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020290442.1 → XP_020146031.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8C5UVH0, A0A8C5W0E7
    Related
    ENSMICP00000031018.1, ENSMICT00000049165.2
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl25758
    Location:1183 → 1384
    DUF4775; Domain of unknown function (DUF4775)
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

  2. XM_020290444.1 → XP_020146033.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A8B7XG81, A0A8C5UVH0
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain
    cl27000
    Location:1175 → 1401
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...

  3. XM_020290443.1 → XP_020146032.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A8B7XDX4, A0A8C5UVH0
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain
    cl27000
    Location:1175 → 1402
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...

  4. XM_020290445.1 → XP_020146034.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A8B7XF97, A0A8C5UVH0
    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

  5. XM_020290441.1 → XP_020146030.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8B7XFN6, A0A8C5UVH0
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl25758
    Location:1183 → 1385
    DUF4775; Domain of unknown function (DUF4775)
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

  6. XM_012752150.1 → XP_012607604.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8B7XFN6, A0A8C5UVH0
    Related
    ENSMICP00000005257.3, ENSMICT00000005761.3
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl25758
    Location:1183 → 1385
    DUF4775; Domain of unknown function (DUF4775)
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

  7. XM_020290446.1 → XP_020146035.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

    UniProtKB/TrEMBL
    A0A8B7XFP2, A0A8C5VV64
    Related
    ENSMICP00000030947.2, ENSMICT00000055218.2
    Conserved Domains (3) summary
    sd00044
    Location:19 → 40
    HEAT; HEAT repeat [structural motif]
    cl25758
    Location:962 → 1164
    DUF4775; Domain of unknown function (DUF4775)
    cl26789
    Location:29 → 240
    Toprim_N; DNA primase catalytic core, N-terminal domain

  8. XM_020290447.1 → XP_020146036.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

    UniProtKB/TrEMBL
    A0A8B7XDX9, A0A8C5VV64
    Conserved Domains (3) summary
    sd00044
    Location:32 → 62
    HEAT; HEAT repeat [structural motif]
    cl25758
    Location:942 → 1144
    DUF4775; Domain of unknown function (DUF4775)
    cl26789
    Location:9 → 220
    Toprim_N; DNA primase catalytic core, N-terminal domain

  9. XM_020290448.1 → XP_020146037.1  sister chromatid cohesion protein PDS5 homolog B isoform X8

    UniProtKB/TrEMBL
    A0A8B7XDX8
    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

RNA

  1. XR_002225060.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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