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LOC105802020 transcription factor bHLH79 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105802020, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105802020
Gene description
transcription factor bHLH79
Locus tag
B456_007G034400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (60853698..60857081)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (2345288..2348685, complement)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene PRA1 family protein B4 Neighboring gene serine/threonine-protein phosphatase PP2A catalytic subunit Neighboring gene probable myosin-binding protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH79

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    60853698..60857081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012633420.2 → XP_012488874.1  transcription factor bHLH79 isoform X2

    See identical proteins and their annotated locations for XP_012488874.1

    UniProtKB/TrEMBL
    A0A0D2QKK6, A0A7J8PIJ2
    Conserved Domains (1) summary
    smart00353
    Location:168 → 217
    HLH; helix loop helix domain

  2. XM_012633419.2 → XP_012488873.1  transcription factor bHLH79 isoform X1

    See identical proteins and their annotated locations for XP_012488873.1

    UniProtKB/TrEMBL
    A0A0D2P244, A0A7J8PIJ2
    Conserved Domains (1) summary
    smart00353
    Location:168 → 217
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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