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LOC105797275 homeotic protein knotted-1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105797275, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105797275
Gene description
homeotic protein knotted-1
Locus tag
B456_005G098100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 3 NC_068567.1 (14575593..14578313)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 5 NC_026933.1 (15045784..15048566)

Chromosome 3 - NC_068567.1Genomic Context describing neighboring genes Neighboring gene putative lipase YDL109C Neighboring gene uncharacterized LOC105795714 Neighboring gene homeobox-leucine zipper protein HAT22 Neighboring gene uncharacterized LOC105795716

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeotic protein knotted-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068567.1 Reference ASM2569854v1 Primary Assembly

    Range
    14575593..14578313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052628146.1 → XP_052484106.1  homeotic protein knotted-1 isoform X2

    UniProtKB/TrEMBL
    A0A0D2RC37

  2. XM_012627232.2 → XP_012482686.1  homeotic protein knotted-1 isoform X1

    See identical proteins and their annotated locations for XP_012482686.1

    UniProtKB/TrEMBL
    A0A0D2SDV3
    Conserved Domains (4) summary
    pfam03789
    Location:191 → 212
    ELK; ELK domain
    pfam03790
    Location:49 → 87
    KNOX1; KNOX1 domain
    pfam03791
    Location:106 → 146
    KNOX2; KNOX2 domain
    pfam05920
    Location:231 → 270
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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