U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105770840 AP2-like ethylene-responsive transcription factor At1g16060 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105770840, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105770840
Gene description
AP2-like ethylene-responsive transcription factor At1g16060
Locus tag
B456_009G122000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (9131321..9134323)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (9066847..9069842)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105767669 Neighboring gene tubby-like protein 8 Neighboring gene probable folate-biopterin transporter 3 Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene uncharacterized LOC105769006

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AP2-like ethylene-responsive transcription factor At1g16060

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    9131321..9134323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012592195.2 → XP_012447649.1  AP2-like ethylene-responsive transcription factor At1g16060 isoform X1

    See identical proteins and their annotated locations for XP_012447649.1

    UniProtKB/TrEMBL
    A0A0D2QEB1, A0A0D2UKM2
    Conserved Domains (2) summary
    smart00380
    Location:146 → 208
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:45 → 116
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  2. XM_012592196.2 → XP_012447650.1  AP2-like ethylene-responsive transcription factor At1g16060 isoform X2

    See identical proteins and their annotated locations for XP_012447650.1

    UniProtKB/TrEMBL
    A0A0D2TNW8, A0A0D2UKM2
    Conserved Domains (2) summary
    smart00380
    Location:143 → 205
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:45 → 113
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases