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LOC105767919 homeobox-leucine zipper protein GLABRA 2 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105767919, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105767919
Gene description
homeobox-leucine zipper protein GLABRA 2
Locus tag
B456_009G135100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105767919 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (10236826..10242753, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (10145649..10151491, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 12 Neighboring gene photosystem I reaction center subunit VI, chloroplastic Neighboring gene 30S ribosomal protein S17, chloroplastic Neighboring gene golgin candidate 5 Neighboring gene probable plastidic glucose transporter 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein GLABRA 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    10236826..10242753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012587510.2 → XP_012442964.1  homeobox-leucine zipper protein GLABRA 2

    See identical proteins and their annotated locations for XP_012442964.1

    UniProtKB/TrEMBL
    A0A0D2S072, A0A0D2TJ79
    Conserved Domains (4) summary
    cd08875
    Location:267 → 495
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:108 → 158
    Homeobox; Homeobox domain
    pfam15898
    Location:161 → 233
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
    cl14643
    Location:545 → 604
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  2. XM_012587509.2 → XP_012442963.1  homeobox-leucine zipper protein GLABRA 2

    See identical proteins and their annotated locations for XP_012442963.1

    UniProtKB/TrEMBL
    A0A0D2S072, A0A0D2TJ79
    Conserved Domains (4) summary
    cd08875
    Location:267 → 495
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:108 → 158
    Homeobox; Homeobox domain
    pfam15898
    Location:161 → 233
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
    cl14643
    Location:545 → 604
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
Nucleotide Protein
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