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CTHRC1 collagen triple helix repeat containing 1 [ Aotus nancymaae (Ma's night monkey) ]

Gene ID: 105732707, updated on 6-Jun-2024

Summary

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Gene symbol
CTHRC1
Gene description
collagen triple helix repeat containing 1
See related
Ensembl:ENSANAG00000022546
Gene type
protein coding
RefSeq status
MODEL
Organism
Aotus nancymaae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Aotidae; Aotus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current 86718_ANA_hifiasm-v0.15.2.pri (GCF_030222135.1) Unplaced Scaffold NW_026988450.1 (52301554..52322617)
101 previous assembly Anan_2.0 (GCF_000952055.2) Unplaced Scaffold NW_018503937.1 (96917..118004)

NW_026988450.1Genomic Context describing neighboring genes Neighboring gene BAALC binder of MAP3K1 and KLF4 Neighboring gene uncharacterized LOC135278045 Neighboring gene small nucleolar RNA ZL63 Neighboring gene frizzled class receptor 6 Neighboring gene solute carrier family 25 member 32 Neighboring gene DDB1 and CUL4 associated factor 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen triple helix repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030222135.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

Genomic

  1. NW_026988450.1 Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

    Range
    52301554..52322617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012474890.3 → XP_012330313.1  collagen triple helix repeat-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5CKA7
    Conserved Domains (1) summary
    pfam01391
    Location:16 → 48
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_012474889.2 → XP_012330312.2  collagen triple helix repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5CKA6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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