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COPA COPI coat complex subunit alpha [ Aotus nancymaae (Ma's night monkey) ]

Gene ID: 105715353, updated on 12-Apr-2024

Summary

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Gene symbol
COPA
Gene description
COPI coat complex subunit alpha
See related
Ensembl:ENSANAG00000023326
Gene type
protein coding
RefSeq status
MODEL
Organism
Aotus nancymaae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Aotidae; Aotus
Orthologs
human mouse all
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Genomic context

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See COPA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_04 current 86718_ANA_hifiasm-v0.15.2.pri (GCF_030222135.1) Unplaced Scaffold NW_026988523.1 (39067282..39118807, complement)
101 previous assembly Anan_2.0 (GCF_000952055.2) Unplaced Scaffold NW_018509651.1 (1258981..1308589)

NW_026988523.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 19 Neighboring gene elongin-C-like Neighboring gene small ribosomal subunit protein uS8-like Neighboring gene nicastrin Neighboring gene nescient helix-loop-helix 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit alpha
Names
coatomer protein complex subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030222135.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

Genomic

  1. NW_026988523.1 Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

    Range
    39067282..39118807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021667358.2 → XP_021523033.1  coatomer subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A2K5CR90, A0A2K5CRA0
    Related
    ENSANAP00000011203.1
    Conserved Domains (4) summary
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:338 → 767
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:816 → 1218
    COPI_C; Coatomer (COPI) alpha subunit C-terminus

  2. XM_021667357.2 → XP_021523032.1  coatomer subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A2K5CRA0
    Related
    ENSANAP00000011212.1
    Conserved Domains (4) summary
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:338 → 776
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:825 → 1227
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
Nucleotide Protein
Heading Accession and Version

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