U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105650688 transcription factor MYB62 [ Jatropha curcas ]

Gene ID: 105650688, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105650688
Gene description
transcription factor MYB62
Locus tag
JCGZ_05902
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590789.1 (7095079..7096557)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012130064.1 (810164..811608)

NW_023590789.1Genomic Context describing neighboring genes Neighboring gene stemmadenine O-acetyltransferase Neighboring gene transcription factor BEE 3 Neighboring gene 40S ribosomal protein S7 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. Zhang L, et al. PLoS One, 2014. PMID 24837971, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor MYB62
Names
MYB family protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590789.1 Reference RJC1_Hi-C Primary Assembly

    Range
    7095079..7096557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037635843.1 → XP_037491771.1  transcription factor MYB62 isoform X2

    Conserved Domains (1) summary
    PLN03212
    Location:24 → 139
    PLN03212; Transcription repressor MYB5; Provisional

  2. XM_012237631.3 → XP_012093021.1  transcription factor MYB62 isoform X1

    See identical proteins and their annotated locations for XP_012093021.1

    UniProtKB/TrEMBL
    A0A067JBM5
    Conserved Domains (2) summary
    smart00717
    Location:26 → 75
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:26 → 73
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases