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UPF2 UPF2 regulator of nonsense mediated mRNA decay [ Mandrillus leucophaeus (drill) ]

Gene ID: 105535701, updated on 13-Mar-2024

Summary

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Gene symbol
UPF2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSMLEG00000036120
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012101476.1 (3252714..3393284)

NW_012101476.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 5 Neighboring gene SEC61 translocon subunit alpha 2 Neighboring gene dehydrogenase E1 and transketolase domain containing 1 Neighboring gene proline and serine rich 2 Neighboring gene enoyl-CoA hydratase domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012101476.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 2
Names
UPF2 regulator of nonsense transcripts homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012101476.1 Reference Mleu.le_1.0

    Range
    3252714..3393284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011974897.1 → XP_011830287.1  regulator of nonsense transcripts 2

    See identical proteins and their annotated locations for XP_011830287.1

    UniProtKB/TrEMBL
    A0A2K5Z878
    Conserved Domains (3) summary
    smart00543
    Location:773 → 986
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam04050
    Location:1095 → 1218
    Upf2; Up-frameshift suppressor 2
    cl19727
    Location:358 → 421
    DUF1451; Zinc-ribbon containing domain

  2. XM_011974896.1 → XP_011830286.1  regulator of nonsense transcripts 2

    See identical proteins and their annotated locations for XP_011830286.1

    UniProtKB/TrEMBL
    A0A2K5Z878
    Related
    ENSMLEP00000024005.1, ENSMLET00000047526.1
    Conserved Domains (3) summary
    smart00543
    Location:773 → 986
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam04050
    Location:1095 → 1218
    Upf2; Up-frameshift suppressor 2
    cl19727
    Location:358 → 421
    DUF1451; Zinc-ribbon containing domain
Nucleotide Protein
Heading Accession and Version

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