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KDM3A lysine demethylase 3A [ Colobus angolensis palliatus ]

Gene ID: 105527790, updated on 13-Mar-2024

Summary

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Gene symbol
KDM3A
Gene description
lysine demethylase 3A
See related
Ensembl:ENSCANG00000040901
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See KDM3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012112919.1 (7827977..7880134)

NW_012112919.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene receptor accessory protein 1 Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene charged multivesicular body protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012112919.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012112919.1 Reference Cang.pa_1.0

    Range
    7827977..7880134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011964249.1 → XP_011819639.1  lysine-specific demethylase 3A

    See identical proteins and their annotated locations for XP_011819639.1

    UniProtKB/TrEMBL
    A0A2K5K056
    Related
    ENSCANP00000034470.1, ENSCANT00000057701.1
    Conserved Domains (2) summary
    smart00558
    Location:1064 → 1134
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1151 → 1264
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_011964258.1 → XP_011819648.1  lysine-specific demethylase 3A

    See identical proteins and their annotated locations for XP_011819648.1

    UniProtKB/TrEMBL
    A0A2K5K056
    Conserved Domains (2) summary
    smart00558
    Location:1064 → 1134
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1151 → 1264
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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