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RORC RAR related orphan receptor C [ Colobus angolensis palliatus ]

Gene ID: 105508885, updated on 13-Mar-2024

Summary

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Gene symbol
RORC
Gene description
RAR related orphan receptor C
See related
Ensembl:ENSCANG00000037032
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114810.1 (2188827..2214764, complement)

NW_012114810.1Genomic Context describing neighboring genes Neighboring gene tudor and KH domain containing Neighboring gene leucine rich repeat and Ig domain containing 4 Neighboring gene C2 calcium dependent domain containing 4D Neighboring gene thioesterase superfamily member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114810.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114810.1 Reference Cang.pa_1.0

    Range
    2188827..2214764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011937903.1 → XP_011793293.1  nuclear receptor ROR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A2K5JEN6
    Conserved Domains (2) summary
    cd06939
    Location:268 → 494
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  2. XM_011937902.1 → XP_011793292.1  nuclear receptor ROR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A2K5JEG5, A0A2K5JEN6
    Related
    ENSCANP00000027232.1, ENSCANT00000050250.1
    Conserved Domains (2) summary
    cd06939
    Location:268 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_011937901.1 → XP_011793291.1  nuclear receptor ROR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A2K5JEC9, A0A2K5JEN6
    Related
    ENSCANP00000027238.1, ENSCANT00000050256.1
    Conserved Domains (2) summary
    cd06939
    Location:310 → 548
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:66 → 160
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  4. XM_011937904.1 → XP_011793294.1  nuclear receptor ROR-gamma isoform X4

    UniProtKB/TrEMBL
    A0A2K5JEI6, A0A2K5JEN6
    Related
    ENSCANP00000027241.1, ENSCANT00000050259.1
    Conserved Domains (2) summary
    cd06939
    Location:247 → 485
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:4 → 97
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
Nucleotide Protein
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