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PCDH18 protocadherin 18 [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105493248, updated on 13-Mar-2024

Summary

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Gene symbol
PCDH18
Gene description
protocadherin 18
See related
Ensembl:ENSMNEG00000044945
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PCDH18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012011555.1 (544028..557686, complement)

NW_012011555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105493247 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC105493249 Neighboring gene uncharacterized LOC105493250

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012011555 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012011555.1 Reference Mnem_1.0

    Range
    544028..557686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011760766.2 → XP_011759068.1  protocadherin-18 isoform X2

    See identical proteins and their annotated locations for XP_011759068.1

    UniProtKB/TrEMBL
    A0A2K6E9D6
    Related
    ENSMNEP00000044780.1, ENSMNET00000069291.1
    Conserved Domains (2) summary
    cd11304
    Location:470 → 572
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:30 → 111
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_011760765.2 → XP_011759067.1  protocadherin-18 isoform X1

    See identical proteins and their annotated locations for XP_011759067.1

    Conserved Domains (2) summary
    cd11304
    Location:470 → 572
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:30 → 111
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_011760767.2 → XP_011759069.1  protocadherin-18 isoform X3

    Conserved Domains (1) summary
    cd11304
    Location:250 → 352
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_011760768.2 → XP_011759070.1  protocadherin-18 isoform X4

    See identical proteins and their annotated locations for XP_011759070.1

    Conserved Domains (1) summary
    cd11304
    Location:250 → 352
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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