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LOC105375027 uncharacterized LOC105375027 [ Homo sapiens (human) ]

Gene ID: 105375027, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105375027
Gene description
uncharacterized LOC105375027
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.5) and testis (RPKM 1.0) See more
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Genomic context

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Location:
6p21.31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33856202..33880178)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33677382..33699206)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375025 Neighboring gene Sharpr-MPRA regulatory region 9014 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:33807424-33808623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33808663-33809597 Neighboring gene uncharacterized LOC124901306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33817822-33818352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33820767-33821549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33830758-33831258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33846380-33846880 Neighboring gene uncharacterized LOC105375026 Neighboring gene long intergenic non-protein coding RNA 1016 Neighboring gene microRNA 7159

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    33856202..33880178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059555.1 RNA Sequence

  2. XR_007059554.1 RNA Sequence

  3. XR_002956341.2 RNA Sequence

  4. XR_002956339.2 RNA Sequence

  5. XR_002956338.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    33677382..33699206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076725.1 RNA Sequence

  2. XR_007076722.1 RNA Sequence

  3. XR_007076724.1 RNA Sequence

  4. XR_007076723.1 RNA Sequence

  5. XR_007076721.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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