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ubqln1 ubiquilin 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 105354720, updated on 9-Nov-2023

Summary

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Gene symbol
ubqln1
Gene description
ubiquilin 1
See related
EnsemblRapid:ENSORLG00000028966
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (10744503..10752752, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (10034738..10043068, complement)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene RAS and EF-hand domain containing Neighboring gene FERM domain containing 3 Neighboring gene IDNK gluconokinase Neighboring gene G kinase anchoring protein 1 Neighboring gene kinesin family member 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    10744503..10752752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020705843.1 → XP_020561502.1  ubiquilin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3ICD6, A0A3B3ICW4
    Conserved Domains (2) summary
    cd01769
    Location:34 → 92
    UBL; Ubiquitin-like domain of UBL
    cl12118
    Location:182 → 260
    LEA_2; Late embryogenesis abundant protein

  2. XM_020705842.1 → XP_020561501.1  ubiquilin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3H5B8
    Related
    ENSORLP00000041596.2, ENSORLT00000030330.2
    Conserved Domains (2) summary
    cd01769
    Location:34 → 92
    UBL; Ubiquitin-like domain of UBL
    cl12118
    Location:182 → 260
    LEA_2; Late embryogenesis abundant protein

  3. XM_011479065.2 → XP_011477367.2  ubiquilin-1 isoform X3

    Conserved Domains (2) summary
    cd01769
    Location:34 → 92
    UBL; Ubiquitin-like domain of UBL
    cl12118
    Location:182 → 260
    LEA_2; Late embryogenesis abundant protein
Nucleotide Protein
Heading Accession and Version

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