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NIN ninein [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105309426, updated on 30-Mar-2024

Summary

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Gene symbol
NIN
Gene description
ninein
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888796.1 (14061432..14155347)

NW_011888796.1Genomic Context describing neighboring genes Neighboring gene glycogen phosphorylase L Neighboring gene abhydrolase domain containing 12B Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC111735823 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene salvador family WW domain containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888796 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in centrosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in centrosome-templated microtubule nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule anchoring at centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary transition fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in pericentriolar material IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ninein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888796.1 Reference Pvam_2.0

    Range
    14061432..14155347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023527249.1 → XP_023383017.1  ninein isoform X1

    UniProtKB/TrEMBL
    A0A6P6C6N0
    Conserved Domains (1) summary
    cl25732
    Location:388 → 1053
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_023527252.1 → XP_023383020.1  ninein isoform X5

    UniProtKB/TrEMBL
    A0A6P6C788
    Conserved Domains (1) summary
    cl25732
    Location:388 → 1053
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_023527253.1 → XP_023383021.1  ninein isoform X6

    UniProtKB/TrEMBL
    A0A6P6C6N4
    Conserved Domains (1) summary
    cl25732
    Location:388 → 1053
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_023527251.1 → XP_023383019.1  ninein isoform X2

    UniProtKB/TrEMBL
    A0A6P6C6N9
    Conserved Domains (1) summary
    cl25732
    Location:388 → 1053
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_011385570.2 → XP_011383872.1  ninein isoform X3

    UniProtKB/TrEMBL
    A0A6P3RMP8
    Conserved Domains (4) summary
    COG0419
    Location:726 → 1340
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:1489 → 2123
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:358 → 1023
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl19219
    Location:475 → 567
    DUF342; Protein of unknown function (DUF342)

  6. XM_011385580.2 → XP_011383882.1  ninein isoform X4

    UniProtKB/TrEMBL
    A0A6P3RM39
    Conserved Domains (3) summary
    COG0419
    Location:726 → 1340
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:358 → 1023
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl19219
    Location:475 → 567
    DUF342; Protein of unknown function (DUF342)

  7. XM_011385608.2 → XP_011383910.1  ninein isoform X8

    UniProtKB/TrEMBL
    A0A6P3RW09
    Conserved Domains (4) summary
    COG0419
    Location:1385 → 1959
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:843 → 1647
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:358 → 1023
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl19219
    Location:475 → 567
    DUF342; Protein of unknown function (DUF342)

  8. XM_023527254.1 → XP_023383022.1  ninein isoform X7

    UniProtKB/TrEMBL
    A0A6P6C6N6
    Conserved Domains (1) summary
    cl25732
    Location:388 → 1053
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_011385614.2 → XP_011383916.1  ninein isoform X9

    UniProtKB/TrEMBL
    A0A6P3S245
    Conserved Domains (4) summary
    COG1340
    Location:631 → 920
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    cd16269
    Location:792 → 803
    GBP_C; coiled coil [structural motif]
    cl19219
    Location:475 → 567
    DUF342; Protein of unknown function (DUF342)
    cl20817
    Location:704 → 821
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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