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LMOD1 leiomodin 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105296907, updated on 30-Mar-2024

Summary

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Gene symbol
LMOD1
Gene description
leiomodin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888912.1 (2292274..2311003, complement)

NW_011888912.1Genomic Context describing neighboring genes Neighboring gene neuron navigator 1 Neighboring gene importin 9 Neighboring gene translocase of inner mitochondrial membrane 17A Neighboring gene arginyl aminopeptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888912 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pointed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in myofibril IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in striated muscle thin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leiomodin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888912.1 Reference Pvam_2.0

    Range
    2292274..2311003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023534750.1 → XP_023390518.1  leiomodin-1 isoform X4

    UniProtKB/TrEMBL
    A0A6P6CT96
    Conserved Domains (3) summary
    pfam03250
    Location:7 → 74
    Tropomodulin
    cl26161
    Location:283 → 415
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl28310
    Location:26 → 198
    Rho; Transcription termination factor Rho [Transcription]

  2. XM_023534748.1 → XP_023390516.1  leiomodin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6CSH6
    Conserved Domains (3) summary
    pfam03250
    Location:7 → 74
    Tropomodulin
    cl26161
    Location:310 → 442
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl28310
    Location:26 → 198
    Rho; Transcription termination factor Rho [Transcription]

  3. XM_011367273.2 → XP_011365575.1  leiomodin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3QZL5
    Conserved Domains (2) summary
    cd00116
    Location:325 → 457
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam03250
    Location:7 → 74
    Tropomodulin; Tropomodulin

  4. XM_023534749.1 → XP_023390517.1  leiomodin-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6CSX1
    Conserved Domains (3) summary
    pfam03250
    Location:7 → 74
    Tropomodulin
    cl26161
    Location:307 → 439
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cl28310
    Location:26 → 198
    Rho; Transcription termination factor Rho [Transcription]

  5. XM_023534751.1 → XP_023390519.1  leiomodin-1 isoform X5

    UniProtKB/TrEMBL
    A0A6P6CSY7
    Conserved Domains (1) summary
    cl26161
    Location:231 → 363
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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