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LOC105251346 4-aminobutyrate aminotransferase, mitochondrial [ Camponotus floridanus (Florida carpenter ant) ]

Gene ID: 105251346, updated on 18-Sep-2024

Summary

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Gene symbol
LOC105251346
Gene description
4-aminobutyrate aminotransferase, mitochondrial
Locus tag
EAG_13160
See related
EnsemblRapid:LOC105251346
Gene type
protein coding
RefSeq status
MODEL
Organism
Camponotus floridanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229214.1 (8026061..8032200, complement)
101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011880934.1 (503120..509211, complement)

NW_020229214.1Genomic Context describing neighboring genes Neighboring gene SUZ domain-containing protein 1 Neighboring gene UPF0505 protein C16orf62 homolog Neighboring gene 4-aminobutyrate aminotransferase, mitochondrial Neighboring gene hypothetical protein Neighboring gene MICAL-like protein 1 Neighboring gene uncharacterized LOC105251353

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gamma-aminobutyric acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-aminobutyrate aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cflo_v7.5

Genomic

  1. NW_020229214.1 Reference Cflo_v7.5

    Range
    8026061..8032200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011258086.3 → XP_011256388.2  4-aminobutyrate aminotransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    E2AE16
    Related
    XP_011256388.2, XM_011258086.3
    Conserved Domains (1) summary
    cl18945
    Location:38 → 497
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_011258087.3 → XP_011256389.2  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    E2AE16
    Related
    XP_011256389.2, XM_011258087.3
    Conserved Domains (1) summary
    cl18945
    Location:2 → 414
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein Strain
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