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LOC105209666 helix-loop-helix protein 11 [ Zeugodacus cucurbitae (melon fly) ]

Gene ID: 105209666, updated on 10-May-2024

Summary

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Gene symbol
LOC105209666
Gene description
helix-loop-helix protein 11
See related
EnsemblRapid:LOC105209666
Gene type
protein coding
RefSeq status
MODEL
Organism
Zeugodacus cucurbitae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Zeugodacus; Zeugodacus
Also known as
Tfap4
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current idZeuCucr1.2 (GCF_028554725.1) 3 NC_071668.1 (596762..612736, complement)
101 previous assembly ASM80634v1 (GCF_000806345.1) Unplaced Scaffold NW_011863680.1 (585341..601373, complement)

Chromosome 3 - NC_071668.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105209664 Neighboring gene A-kinase anchoring protein pkaap Neighboring gene uncharacterized LOC128920501 Neighboring gene protein nubbin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Sim SB, et al. Gigascience, 2015. PMID 25830018, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helix-loop-helix protein 11
Names
transcription factor AP-4 (activating enhancer binding protein 4)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028554725.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idZeuCucr1.2 Primary Assembly

Genomic

  1. NC_071668.1 Reference idZeuCucr1.2 Primary Assembly

    Range
    596762..612736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011180200.3 → XP_011178502.1  helix-loop-helix protein 11

    See identical proteins and their annotated locations for XP_011178502.1

    UniProtKB/TrEMBL
    A0A0A1WKH8
    Related
    XP_011178502.1, XM_011180200.3
    Conserved Domains (1) summary
    pfam00010
    Location:94 → 145
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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