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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Camelus dromedarius (Arabian camel) ]

Gene ID: 105086609, updated on 19-Apr-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
Locus tag
Cadr_000014937
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus dromedarius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_04 current mCamDro1.pat (GCF_036321535.1) 12 NC_087447.1 (41300604..41322889, complement)
101 previous assembly CamDro3 (GCF_000803125.2) 10 NC_044520.1 (37376763..37399076, complement)

Chromosome 12 - NC_087447.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED-type containing 5 Neighboring gene small nucleolar RNA SNORD97 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene small nucleolar RNA U2-30 Neighboring gene small nucleolar RNA U2-19 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog
Names
RNA polymerase-associated protein CTR9-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036321535.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCamDro1.pat

Genomic

  1. NC_087447.1 Reference mCamDro1.pat

    Range
    41300604..41322889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010977141.3 → XP_010975443.2  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A5N4DNZ5
    Conserved Domains (3) summary
    TIGR02917
    Location:110 → 781
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    NF000535
    Location:1082 → 1176
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
Nucleotide Protein
Heading Accession and Version

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