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dmc1 DNA meiotic recombinase 1 [ Esox lucius (northern pike) ]

Gene ID: 105025102, updated on 18-Jun-2024

Summary

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Gene symbol
dmc1
Gene description
DNA meiotic recombinase 1
See related
Ensembl:ENSELUG00000019339
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 5 NC_047573.1 (17322798..17328910)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG05 NC_025972.4 (17504518..17510630)

Chromosome 5 - NC_047573.1Genomic Context describing neighboring genes Neighboring gene v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F Neighboring gene translocase of outer mitochondrial membrane 22 homolog (yeast) Neighboring gene G1 to S phase transition 1 Neighboring gene adhesion G-protein coupled receptor F1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA strand exchange activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombinase assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
meiotic recombination protein DMC1/LIM15 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047573.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    17322798..17328910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020046822.2 → XP_019902381.1  meiotic recombination protein DMC1/LIM15 homolog isoform X3

    Conserved Domains (1) summary
    cl26757
    Location:26 → 319
    Rad51

  2. XM_010895559.3 → XP_010893861.1  meiotic recombination protein DMC1/LIM15 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3P9ADK1, A0A6Q2ZAP6
    Related
    ENSELUP00000039251.1, ENSELUT00000041304.3
    Conserved Domains (3) summary
    TIGR02238
    Location:26 → 340
    recomb_DMC1; meiotic recombinase Dmc1
    cd01123
    Location:103 → 337
    Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    pfam14520
    Location:33 → 81
    HHH_5; Helix-hairpin-helix domain

  3. XM_020046821.2 → XP_019902380.1  meiotic recombination protein DMC1/LIM15 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6Q2ZAP6
    Conserved Domains (1) summary
    cl26757
    Location:26 → 335
    Rad51

  4. XM_020046823.2 → XP_019902382.1  meiotic recombination protein DMC1/LIM15 homolog isoform X4

    Conserved Domains (1) summary
    cl26757
    Location:26 → 261
    Rad51
Nucleotide Protein
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