U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sycp1 synaptonemal complex protein 1 [ Esox lucius (northern pike) ]

Gene ID: 105023704, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sycp1
Gene description
synaptonemal complex protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 17
Exon count:
31
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (11427715..11447244, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (37057998..37077513)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 8, like Neighboring gene uncharacterized LOC105023675 Neighboring gene solute carrier family 16 member 1a Neighboring gene TAFA chemokine like family member 3a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chiasma assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lateral element assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA repair synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in central element IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in male germ cell nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transverse filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptonemal complex protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    11427715..11447244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034287200.1 → XP_034143091.1  synaptonemal complex protein 1

    UniProtKB/TrEMBL
    A0A3P8Z3S5
    Conserved Domains (1) summary
    pfam05483
    Location:43 → 725
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.