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pcdh7b protocadherin 7b [ Esox lucius (northern pike) ]

Gene ID: 105020744, updated on 18-Jun-2024

Summary

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Gene symbol
pcdh7b
Gene description
protocadherin 7b
See related
Ensembl:ENSELUG00000010732
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
pcdh7
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 24 NC_047592.1 (6624354..6749962, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG24 NC_025991.4 (6695208..6821205, complement)

Chromosome 24 - NC_047592.1Genomic Context describing neighboring genes Neighboring gene death domain containing 1 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 Neighboring gene repetitive proline-rich cell wall protein 1-like Neighboring gene GATA zinc finger domain-containing protein 14-like Neighboring gene stromal interaction molecule 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-7b
Names
protocadherin 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047592.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    6624354..6749962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010887986.5 → XP_010886288.1  protocadherin-7b isoform X3

    UniProtKB/TrEMBL
    A0A3P8Y0J4, A0A3P8ZWM8
    Related
    ENSELUP00000032723.1, ENSELUT00000002507.3
    Conserved Domains (2) summary
    cd11304
    Location:509 → 603
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:810 → 1021
    Protocadherin; Protocadherin

  2. XM_013140475.4 → XP_012995929.1  protocadherin-7b isoform X2

    UniProtKB/TrEMBL
    A0A3P8Y0J4
    Conserved Domains (2) summary
    cd11304
    Location:509 → 603
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:810 → 1021
    Protocadherin; Protocadherin

  3. XM_013140474.4 → XP_012995928.1  protocadherin-7b isoform X1

    UniProtKB/TrEMBL
    A0A3P8Y0J4, A0A3P8Y3J0
    Related
    ENSELUP00000010213.2, ENSELUT00000002518.3
    Conserved Domains (2) summary
    cd11304
    Location:509 → 603
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:810 → 1021
    Protocadherin; Protocadherin

  4. XM_010887987.5 → XP_010886289.1  protocadherin-7b isoform X5

    UniProtKB/TrEMBL
    A0A3P8Y0J4
    Conserved Domains (2) summary
    cd11304
    Location:509 → 603
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:810 → 1021
    Protocadherin; Protocadherin

  5. XM_013140476.4 → XP_012995930.1  protocadherin-7b isoform X4

    UniProtKB/TrEMBL
    A0A3P8Y0J4
    Conserved Domains (2) summary
    cd11304
    Location:509 → 603
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:810 → 1021
    Protocadherin; Protocadherin
Nucleotide Protein
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